NM_015046.5(SETX):c.[1807A>G;1957C>A] AND Spinocerebellar ataxia autosomal recessive 1
| Significance: | Pathogenic |
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| ClinVar: | RCV000002383 |
Variant: NM_015046.5(SETX):c.[1807A>G;1957C>A] |
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| Type: | Haplotype |
Allele: NM_015046.7(SETX):c.1807A>G (p.Asn603Asp) 17332 |
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| Gene: | SETX |
| Type: | single nucleotide variant |
| Location: |
Chr9: 132329791
- assembly
GRCh38 Chr9: 135205178 - assembly GRCh37 |
| References: | dbSNP:
116205032 OMIM: 608465.0010 UniProtKB: Q7Z333#VAR_036647 |
Allele: NM_015046.7(SETX):c.1957C>A (p.Gln653Lys) 38424 |
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| Gene: | SETX |
| Type: | single nucleotide variant |
| Location: |
Chr9: 132329641
- assembly
GRCh38 Chr9: 135205028 - assembly GRCh37 |
| References: | dbSNP:
116333061 OMIM: 608465.0010 UniProtKB: Q7Z333#VAR_036648 |
Condition |
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| Disease: | Spinocerebellar ataxia autosomal recessive 1 |
Citation |
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In an African American mother and daughter with a restricted form of autosomal recessive spinocerebellar ataxia with axonal neuropathy-2 (SCAN2; 606002), Bassuk et al. (2007) identified 2 mutations in cis in the SETX gene: a 1807A-G transition, resulting in an asn603-to-asp (N603D) substitution, and a 1957C-A transversion, resulting in a gln653-to-lys (Q653K) substitution. The mutations occurred in a region adjacent to a putative N-terminal protein interaction domain. Detailed analysis confirmed that the 2 mutations were on the same allele and were part of the same haplotype. Although both mother and daughter had frequent falls, oculomotor deficits, and tremor, neither had peripheral neuropathy or 'head thrusting' associated with horizontal gaze, both of which are classic findings in SCAN2. Bassuk et al. (2007) postulated that the 2 mutations acted synergistically, leading to a dominant-negative mutant protein with partial function and an incomplete phenotype. PMID:17096168 |
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